Preliminary data on the distribution of mtDNA lineages of the grey red-backed vole (Craseomys rufocanus Sundevall, 1846) in the southwest of Primorsky Krai

Authors

  • Irina N. Sheremetyeva Federal Scientific Center of the East Asia Terrestrial Biodiversity FEB RAS https://orcid.org/0000-0003-3465-9009
  • Veronica S. Shpeko Federal Scientific Center of the East Asia Terrestrial Biodiversity FEB RAS

DOI:

https://doi.org/10.33910/2686-9519-2024-16-4-832-838

Keywords:

grey red-backed vole, Craseomys rufocanus, mtDNA, phylogenetic groups, Primorsky Krai

Abstract

The study examines the variability of the cytochrome b (cytb) gene fragment in the grey red-backed vole (Craseomys rufocanus) from the southwest of Primorsky Krai. A total of 16 new haplotypes distributed across two distinct phylogroups were identified. The findings suggest classifying the F-haplotype as a separate phylogenetic group and subdividing phylogroup D into two distinct subgroups. Preliminary data on the geographical distribution of mtDNA lineages in the south of the region are also presented. A notable trend was observed in the decreasing frequency of C-2-haplotypes from north to south, and of D-haplotypes from west to east. Additionally, the presence of exclusively D-haplotypes in the southwest of Primorsky Krai suggests a potential barrier effect of the Suifun-Khanka Plain on the distribution of the grey red-backed vole in this area.

References

Abramson, N. I., Abramov, A. V., Baranova, G. I. (2009) New species of red-backed vole (Mammalia: Rodentia: Cricetidae) in fauna of Russia: Molecular and morphological evidences. Proceedings of the Zoological Institute of the Russian Academy of Sciences, vol. 313, no. 1, pp. 3–9. https://doi.org/10.31610/trudyzin/2009.313.1.3 (In English)

Abramson, N. I., Petrova, T. V., Dokuchaev, N. E. et al. (2012) Phylogeography of the gray red-backed vole Craseomys rufocanus (Rodentia: Cricetidae) across the distribution range inferred from nonrecombining molecular markers. Russian Journal of Theriology, vol. 11, no. 2, pp. 137–156. (In English)

Abramson, N. I., Tursunova, L. S., Petrova, T. V. et al. (2023) Colonization history of the grey red-backed vole Craseomys rufocanus on Iturup island inferred from the analysis of the cytochrome b (cytb) gene fragment. Russian Journal of Genetics, vol. 59, no. 8, pp. 824–830. (https://doi.org/10.1134/S1022795423080021 (In English)

Aljanabi, S. M., Martinez, I. (1997) Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acids Research, vol. 25, no. 22, pp. 4692–4693. https://doi.org/10.1093/nar/25.22.4692 (In English)

Bandelt, H. J., Forster, P., Röhl, A. (1999) Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution, vol. 16, no. 1, pp. 37–48. https://doi.org/10.1093/oxfordjournals.molbev.a026036 (In English)

Cook, J. A., Runck, A. M., Conroy, C. J. (2004) Historical biogeography at the crossroads of the northern continents: Molecular phylogenetics of red-backed voles (Rodentia: Arvicolinae). Molecular Phylogenetics and Evolution, vol. 30, no. 3, pp. 767–777. https://doi.org/10.1016/S1055-7903(03)00248-3 (In English)

Davis, M. B., Shaw, R. G. (2001) Range shifts and adaptive responses to Quaternary climate change. Science, vol. 292, no. 5517, pp. 673–679. https://doi.org/10.1126/science.292.5517.673 (In English)

Dekonenko, A., Yakimenko, V., Ivanov, A. et al. (2003) Genetic similarity of Puumala viruses found in Finland and western Siberia and of the mitochondrial DNA of their rodent hosts suggests a common evolutionary origin. Infection, Genetics and Evolution, vol. 3, no. 4, pp. 245–257. https://doi.org/10.1016/S1567-1348(03)00088-1 (In English)

Glushkova, O. Yu. (2011) Late Pleistocene glaciations in North-East Asia. In: J. Ehlers, P. L. Gibbard, P. D. Hughes (eds.). Developments in Quaternary sciences. Vol. 15. Amsterdam: Elsevier Publ., pp. 865–875. https://doi.org/10.1016/B978-0-444-53447-7.00063-5 (In English)

Hall, T. A. (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, no. 41, pp. 95–98. (In English)

Harrison, S. P., Yu, G., Takahara, H., Prentice, I. C. (2001) Diversity of temperate plants in East Asia. Nature, vol. 413, no. 6852, pp. 129–130. https://doi.org/10.1038/35093166 (In English)

Hewitt, G. M. (2000) The genetic legacy of the Quaternary ice ages. Nature, vol. 405 (6789), pp. 907–913. https://doi.org/10.1038/35016000 (In English)

Hewitt, G. M. (1999) Post-glacial re-colonization of European biota. Biological Journal of the Linnean Society, vol. 68, no. 1-2, pp. 87–112. https://doi.org/10.1111/j.1095-8312.1999.tb01160.x (In English)

Hewitt, G. M. (2004) Genetic consequences of climatic oscillations in the Quaternary. Philosophical Transactions of the Royal Society B: Biological Sciences, vol. 359, no. 1442, pp. 183–195. https://doi.org/10.1098/rstb.2003.1388 (In English)

Iwasa, M. A., Utsumi, Y., Nakata, K. et al. (2000) Geographic patterns of cytochrome b and Sry gene lineages in the gray red-backed vole Clethrionomys rufocanus from Far East Asia including Sakhalin and Hokkaido. Zoological Science, vol. 17, pp. 477–484. (In English)

Kier, G., Kreft, H., Lee, T. M., Barthlott, W. (2009) A global assessment of endemism and species richness across island and mainland regions. PNAS, vol. 106, no. 23, pp. 9322–9327. https://doi.org/10.1073/pnas.0810306106 (In English)

Nørgaard, J., Margold, N. M., Jansen, J. D. et al. (2023) Absence of large-scale ice masses in central Northeast Siberia during the late Pleistocene. Geophysical Research Letters, vol. 50, no. 10, article e2023GL103594. https://doi.org/10.1029/2023GL103594 (In English)

Ren, G., Mateo, R. G., Liu, J. et al. (2017) Genetic consequences of Quaternary climatic oscillations in the Himalayas: Primula tibetica as a case study based on restriction site-associated DNA sequencing. New Phytologist, vol. 213, no. 3, pp. 1500–1512. https://doi.org/10.1111/nph.14221 (In English)

Sommer, R. S., Nadachowski, A. (2006) Glacial refugia of mammals in Europe: Evidence from fossil records. Mammal Review, vol. 36, no. 4, pp. 251–265. https://doi.org/10.1111/j.1365-2907.2006.00093.x (In English)

Stewart, J. R., Lister, A. M., Barnes, I., Dalén, L. (2010) Refugia revisited: Individualistic responses of species in space and time. Proceedings of the Royal Society B: Biological Sciences, vol. 277, no. 1682, pp. 661–671. https://doi.org/10.1098/rspb.2009.1272 (In English)

Published

2024-12-05

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Section

Articles