Variability of the gene cyt b in the Korean field mouse Apodemus peninsulae Thomas, 1906 — a reservoir host of AMRV in the Khasansky District of Primorsky Krai
DOI:
https://doi.org/10.33910/2686-9519-2024-16-1-56-64Keywords:
Korean field mouse Apodemus peninsulae, Amur virus, mitochondrial DNA, cytochrome b (cyt b), phylogenetic linesAbstract
The study investigated the variability of the gene b (cyt b) in the Korean field mouse Apodemus peninsulae. In total, 13 samples of cytochrome gene fragments of mitochondrial DNA (744 bp) were analyzed from the Korean field mice population of the Land of the Leopard National Park (in south of Primorsky Krai). The study found that the population has two phylogenetic lines: Amur and Korea. Importantly, the Korea line was first recorded for the Russian Far East. The article discusses the coherence in the evolution of AMRV and the Korean field mouse as its reservoir host.
References
ЛИТЕРАТУРА
Громов, И. М., Ербаева, М. А. (1995) Млекопитающие фауны России и сопредельных территорий. Зайцеобразные и грызуны. СПб.: ЗИН РАН, 522 с.
Костенко, В. А. (2000) Грызуны (Rodentia) Дальнего Востока России. Владивосток: Дальнаука, 210 с.
Подгорная, О. И., Галактионов, Н. К. (2009) Мобильные элементы как потенциальные векторы горизонтального переноса генетической информации в системах паразит–хозяин. Труды Зоологического института РАН, т. 313, № 3, с. 283–296. https://doi.org/10.31610/trudyzin/2009.313.3.283
Потт, А. Б., Компанец, Г. Г. (2017) Изучение вирулентности штаммов геноварианта Amur ортохантавируса Hantaan. Здоровье. Медицинская экология. Наука, т. 72, № 5, с. 82–86. https://doi.org/10.5281/zenodo.1115481
Савицкая, Т. А., Иванова, А. В., Исаева, Г. Ш. и др. (2021) Обзор хантавирусных инфекций в мире, эпидемиологической ситуации по геморрагической лихорадке с почечным синдромом в Российской Федерации в 2020 г. и прогноз на 2021 г. Проблемы особо опасных инфекций, № 2, с. 62–70. https://doi.org/10.21055/0370-1069-2021-2-62-70
Синюгина, А. А., Дзагурова, Т. К., Ишмухаметов, А. А. и др. (2019) Доклинические исследования поливалентной вакцины против геморрагической лихорадки с почечным синдромом. Эпидемиология и Bакцинопрофилактика, т. 18, № 4, с. 52–58. https://doi.org/10.31631/2073-3046-2019-18-4-52-58
Ткаченко, Е. А., Бернштейн, А. Д., Дзагурова, Т. К. и др. (2005) Сравнительный анализ эпидемических вспышек геморрагической лихорадки с почечным синдромом, вызванных вирусами Пуумала и Добрава/Белград. Эпидемиология и вакцинопрофилактика, № 4, с. 28–34.
Шереметьева, И. Н., Цуканова, В. Д., Тимофеева, Д. М. и др. (2020) Новые данные по распределению основных филогенетических линий восточноазиатской мыши Apodemus peninsulae на востоке России. Региональные проблемы, т. 23, № 3, с. 10–20.
Яшина, Л. Н. (2012) Генетическое разнообразие хантавирусов в популяциях грызунов и насекомоядных Азиатской части России. Автореферат диссертации на соискание ученой степени доктора биологических наук. Новосибирск, Государственный научный центр вирусологии и биотехнологии «Вектор», 50 с.
Яшина, Л. Н., Сметанникова, Н. А., Компанец, Г. Г. и др. (2019) Молекулярная эпидемиология патогенных хантавирусов на Дальнем Востоке России, 2015–2018 гг. Проблемы особо опасных инфекций, № 4, с. 102–108. https://doi.org/10.21055/0370-1069-2019-4-102-108
Aljanabi, S. M., Martinez, I. (1997) Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acids Research, vol. 25, no. 22, pp. 4692–4693. https://doi.org/10.1093/nar/25.22.4692.
Bayarlkhagva, M., Tumendemberel, O., Bayarlkhagva, D. (2013) Mitochondrial cytochrome b gene study of Apodemus peninsulae in Mongolia. International Journal of Current Research, vol. 5, no. 12, pp. 3892–3896. https://doi.org/10.13140/RG.2.2.24365.31200
Bennett, S. N., Gu, S. H., Kang, H. J. et al. (2014) Reconstructing the evolutionary origins and phylogeography of hantaviruses. Trends in Microbiology, vol. 22, no. 8, pp. 473–482. https://doi.org/10.1016/j.tim.2014.04.008
Hall, T. A. (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, vol. 41, pp. 95–98.
Hasegawa, M., Kishino, H., Yano, T. (1985) Dating the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution, vol. 22, pp. 160–174. https://doi.org/10.1007/BF02101694
Jonsson, C. B., Figueiredo, L. T. M., Vapalahti, O. (2010) A global perspective on hantavirus ecology, epidemiology, and disease. Clinical Microbiology Reviews, vol. 23, no. 2, pp. 412–441. https://doi.org/10.1128/CMR.00062-09
Kariwa, H., Yoshimatsu, K., Arikawa, J. (2007) Hantavirus infection in East Asia. Comparative Immunology, Microbiology, Infectious Diseases, vol. 30, no. 5–6, pp. 341–356. https://doi.org/10.1016/j.cimid.2007.05.011
Kim, H. R., Park, Y. C. (2011) The complete mitochondrial genome of the Korean field mouse Apodemus peninsulae (Rodentia, Murinae) from Korea. Mitochondrial DNA, vol. 22, nо. 4, pp. 97–98. https://doi.org/10.3109/19401736.2011.624610
Kumar, S., Stecher, G., Li, M. et al. (2018) MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Molecular Biology and Evolution, vol. 35, no. 6, pp. 1547–1549. https://doi.org/10.1093/molbev/msy096
Liu, S.-Y., He, K., Chen, S. D. et al. (2018) How many species of Apodemus and Rattus occur in China? A survey based on mitochondrial cyt b and morphological analyses. Zoological Research, vol. 39, nо. 5, pp. 309–320. https://doi.org/10.24272/j.issn.2095-8137.2018.053
Liu, X., Wei, F., Li, M. et al (2004) Molecular phylogeny and taxonomy of wood mice (genus Apodemus Kaup, 1829) based on complete mtDNA cytochrome b sequences, with emphasis on Chinese species. Molecular Phylogenetics and Evolution, vol. 33, nо. 1, pp. 1–15. https://doi.org/10.1016/j.ympev.2004.05.011
Sakka, H., Quéré, J. P., Kartavtseva, I. V. et al. (2010) Comparative phylogeography of four Apodemus species (Mammalia: Rodentia) in the Asian Far East: evidence of Quaternary climatic changes in their genetic structure. Biological Journal of the Linnean Society, vol. 100, no. 4, pp. 797–821. https://doi.org/10.1111/j.1095-8312.2010.01477.x
Schmaljohn, C. (2009) Vaccines for hantaviruses. Vaccine, vol. 27, suppl. 5, pp. D61–D64. https://doi.org/10.1016/j.vaccine.2009.07.096
Serizawa, K., Suzuki, H., Iwasa, M. A. et al. (2002) A spatial aspect on mitochondrial DNA genealogy in Apodemus peninsulae from East Asia. Biochemical Genetics, vol. 40, no. 5–6, pp. 149–161. https://doi.org/10.1023/a:1015841
Yashina, L. N., Mishin, V. P., Zdanovskaya, N. et al. (2001) A newly discovered variant of a hantavirus in Apodemus peninsulae, Far Eastern Russia. Emerging Infectious Diseases, vol. 7, no. 5, pp. 912–913. https://doi.org/10.3201/eid0705.017530
Yashina, L. N., Patrushev, N. A., Ivanov, L. I. et al. (2000) Genetic diversity of hantaviruses associated with hemorrhagic fever with renal syndrome in the Far East of Russia. Virus Research, vol. 70, no. 1–2, pp. 31–44. https://doi.org/10.1016/s0168-1702(00)00203-3
Zhang, Y.-Z., Zou, Y., Yao, L.-S. et al. (2007) Isolation and characterization of hantaviruses carried by Apodemus peninsulae in Jilin, China. Journal of General Virology, vol. 88, no. 4, pp. 1295–1301. https://doi.org/10.1099/vir.0.82534-0
REFERENSES
Aljanabi, S. M., Martinez, I. (1997) Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acids Research, vol. 25, no. 22, pp. 4692–4693. https://doi.org/10.1093/nar/25.22.4692 (In English)
Bayarlkhagva, M., Tumendemberel, O., Bayarlkhagva, D. (2013) Mitochondrial cytochrome b gene study of Apodemus peninsulae in Mongolia. International Journal of Current Research, vol. 5, no. 12, pp. 3892–3896. https://doi.org/10.13140/RG.2.2.24365.31200 (In English)
Bennett, S. N., Gu, S. H., Kang, H. J. et al. (2014) Reconstructing the evolutionary origins and phylogeography of hantaviruses. Trends in Microbiology, vol. 22, no. 8, pp. 473–482. https://doi.org/10.1016/j.tim.2014.04.008 (In English)
Gromov, I. M., Erbaeva, M. A. (1995) Mlekopitayushchie fauny Rossii i sopredel’nykh territorij. Zajtseobraznye i gryzuny [Mammals of Fauna of Russia and Adjacent Territories. Lagomorphs and Rodents]. Saint Petersburg: Zoological Institute RAS Publ., 522 p. (In Russian)
Hall, T. A. (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, vol. 41, pp. 95–98. (In English)
Hasegawa, M., Kishino, H., Yano, T. (1985) Dating the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution, vol. 22, pp. 160–174. https://doi.org/10.1007/BF02101694 (In English)
Jonsson, C. B., Figueiredo, L. T. M., Vapalahti, O. (2010) A global perspective on hantavirus ecology, epidemiology, and disease. Clinical Microbiology Reviews, vol. 23, no. 2, pp. 412–441. https://doi.org/10.1128/CMR.00062-09 (In English)
Kariwa, H., Yoshimatsu, K., Arikawa, J. (2007) Hantavirus infection in East Asia. Comparative Immunology, Microbiology, Infectious Diseases, vol. 30, no. 5–6, pp. 341–356. https://doi.org/10.1016/j.cimid.2007.05.011 (In English)
Kim, H. R., Park, Y. C. (2011) The complete mitochondrial genome of the Korean field mouse Apodemus peninsulae (Rodentia, Murinae) from Korea. Mitochondrial DNA, vol. 22, nо. 4, pp. 97–98. https://doi.org/10.3109/19401736.2011.624610 (In English)
Kostenko, V. A. (2000) Gryzuny (Rodentia) Dal’nego Vostoka Rossii [Rodents (Rodentia) of the Russian Far East]. Vladivostok: Dalnauka Publ., 210 p. (In Russian)
Kumar, S., Stecher, G., Li, M. et al. (2018) MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Molecular Biology and Evolution, vol. 35, no. 6, pp. 1547–1549. https://doi.org/10.1093/molbev/msy096 (In English)
Liu, S.-Y., He, K., Chen, S.-D. et al. (2018) How many species of Apodemus and Rattus occur in China? A survey based on mitochondrial cyt b and morphological analyses. Zoological Research, vol. 39, nо. 5, pp. 309–320. https://doi.org/10.24272/j.issn.2095-8137.2018.053 (In English)
Liu,X., Wei, F., Li, M., et al. (2004) Molecular phylogeny and taxonomy of wood mice (genus Apodemus Kaup, 1829) based on complete mtDNA cytochrome b sequences, with emphasis on Chinese species. Molecular Phylogenetics and Evolution, vol. 33, nо. 1, pp. 1–15. https://doi.org/10.1016/j.ympev.2004.05.011 (In English)
Podgornaya, O. I., Galaktionov, N. K. (2009) Mobil’nye elementy kak potentsial’nye vektory gorizontal’nogo perenosa geneticheskoj informatsii v sistemakh parazit–hozyain [Transposable elements as a potential vectors for horizontal gene transfer in host–parasite system]. Trudy Zoologicheskogo instituta RAN — Proceedings of the Zoological Institute RAS, vol. 313, no. 3, pp. 283–296. https://doi.org/10.31610/trudyzin/2009.313.3.283 (In Russian)
Pott, A. B., Kompanets, G. G. (2017) Izuchenie virulentnosti shtammov genovarianta Amur ortohantavirusa Hantaan [The study of virulence of Orthohantavirus Hantaan genovariant Amur strains]. Zdorov’e. Meditsinskaya ekologiya. Nauka — Health. Medical ecology. Science, vol. 72, no. 5, pp. 82–86. https://doi.org/10.5281/zenodo.1115481 (In Russian)
Sakka, H., Quéré, J. P., Kartavtseva, I. V. et al. (2010) Comparative phylogeography of four Apodemus species (Mammalia: Rodentia) in the Asian Far East: evidence of Quaternary climatic changes in their genetic structure. Biological Journal of the Linnean Society, vol. 100, no. 4, pp. 797–821. https://doi.org/10.1111/j.1095-8312.2010.01477.x (In English)
Savitskaya, T. A., Ivanova, A. V., Isaeva, G. Sh. et al. (2021) Obzor hantavirusnykh infektsij v mire, epidemiologicheskoj situatsii po gemorragicheskoj likhoradke s pochechnym sindromom v Rossijskoj Federatsii v 2020 g. i prognoz na 2021 g. [Review of Hantavirus Infections in the World, Epidemiological Situation on Hemorrhagic Fever with Renal Syndrome in the Russian Federation in 2020 and a Forecast for 2021]. Problemy osobo opasnykh infektsij — Problems of Particularly Dangerous Infections, no. 2, pp. 62–70. https://doi.org/10.21055/0370-1069-2021-2-62-70 (In Russian)
Schmaljohn, C. (2009) Vaccines for hantaviruses. Vaccine, vol. 27, suppl. 5, pp. D61–D64. https://doi.org/10.1016/j.vaccine.2009.07.096 (In English)
Serizawa, K., Suzuki, H., Iwasa, M. A. et al. (2002) A spatial aspect on mitochondrial DNA genealogy in Apodemus peninsulae from East Asia. Biochemical Genetics, vol. 40, no. 5–6, pp. 149–161. https://doi.org/10.1023/a:1015841 (In English)
Sheremetyeva, I. N., Tsukanova, V. D., Timofeeva, D. M. et al. (2020) Novye dannye po raspredeleniyu osnovnykh filogeneticheskikh linij vostochnoaziatskoj myshi Apodemus peninsulae na vostoke Rossii [New data on distribution of basic phylogenetic lines of the Korean field mice Apodemus peninsulae in the East of Russia]. Regional’nye problemy — Regional Problems, vol. 23, no. 3, p. 10–20. (In Russian)
Sinyugina, A. A., Dzagurova, T. K., Ishmukhametov, A. A. et. al. (2019) Doklinicheskie issledovaniya polivalentnoj vaktsiny protiv gemorragicheskoj likhoradki s pochechnym sindromom [Pre-Clinical Studies of Inactivated Polivalent Vaccine Against Hemorrhagic Fever with Renal Syndrome]. Epidemiologiya i Vaktsinoprofilaktika — Epidemiology and Vaccinal Prevention, vol. 18, no. 4, pp. 52–58. https://doi.org/10.31631/2073-3046-2019-18-4-52-58 (In Russian)
Tkachenko, E. A., Bernshtejn, A. D., Dzagurova, T. K. et al. (2005) Sravnitel’nyj analiz epidemicheskikh vspyshek gemorragicheskoj likhoradki s pochechnym sindromom, vyzvannykh virusami Puumala i Dobrava/Belgrad [Comparative analysis of epidemic outbreaks of hemorrhagic fever with renal syndrome caused by Puumala and Dobrava/Belgrade viruses]. Epidemiologiya i vaktsinoprofilaktika — Epidemiology and Vaccinal Prevention, no. 4, pp. 28–34. (In Russian)
Yashina, L. N. (2012) Geneticheskoe raznoobrazie khantavirusov v populyatsiyakh gryzunov i nasekomoyadnykh Aziatskoj chasti Rossii [Genetic diversity of hantaviruses in populations of rodents and insectivores in the Asian part of Russia]. Extended abstract of PhD dissertation (Biology). Novosibirsk, State Research Center of Virology and Biotechnology VECTOR, 50 p. (In Russian)
Yashina, L. N., Mishin, V. P., Zdanovskaya, N. et al. (2001) A newly discovered variant of a hantavirus in Apodemus peninsulae, Far Eastern Russia. Emerging Infectious Diseases, vol. 7, no. 5, pp. 912–913. https://doi.org/10.3201/eid0705.017530 (In English)
Yashina, L. N., Patrushev, N. A., Ivanov, L. I. et al. (2000) Genetic diversity of hantaviruses associated with hemorrhagic fever with renal syndrome in the Far East of Russia. Virus Research, vol. 70, no. 1–2, pp. 31–44. https://doi.org/10.1016/s0168-1702(00)00203-3 (In English)
Yashina, L. N., Smetannikova, N. A., Kompanets, G. G. et al. (2019) Molekulyarnaya epidemiologiya patogennykh hantavirusov na Dal’nem Vostoke Rossii, 2015–2018 gg. [Molecular Epidemiology of Pathogenic Hantaviruses in the Far East of Russia, 2015–2018]. Problemy osobo opasnykh infektsij — Problems of Particularly Dangerous Infections, no. 4, pp. 102–108. https://doi.org/10.21055/0370-1069-2019-4-102-108 (In Russian)
Zhang, Y.-Z., Zou, Y., Yao, L.-S. et al. (2007) Isolation and characterization of hantaviruses carried by Apodemus peninsulae in Jilin, China. Journal of General Virology, vol. 88, no. 4, pp. 1295–1301. https://doi.org/10.1099/vir.0.82534-0 (In English)
Downloads
Published
Issue
Section
License
Copyright (c) 2024 Viktoria D. Tsukanova, Irina N. Sheremetyeva, Vasily M. Malygin
This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.
The work is provided under the terms of the Public Offer and of Creative Commons public license Attribution-NonCommercial 4.0 International (CC BY-NC 4.0). This license allows an unlimited number of persons to reproduce and share the Licensed Material in all media and formats. Any use of the Licensed Material shall contain an identification of its Creator(s) and must be for non-commercial purposes only.