Genetic characteristics of populations of inconnu Stenodus leucichthys nelma (Pallas, 1773) from rivers of Western Siberia
DOI:
https://doi.org/10.33910/2686-9519-2026-18-2-522-534Keywords:
inconnu, genetic polymorphism, population differentiation, DNA markers, the Taz River, the Severnaya Sosva River, the Ob River, the Irtysh River, West SiberiaAbstract
The article presents first data on genetic polymorphism of inconnu Stenodus leucichthys nelma (Pallas, 1773) populations in the Ob, Irtysh, Severnaya Sosva, and Taz rivers of Western Siberia, Russia. A total of 69 inconnu specimens from five localities were studied using 33 inter simple sequence repeats markers. Low genetic polymorphism was detected in natural populations of inconnu from Western Siberian rivers. The proportion of polymorphic loci (P) was 30–45%, and genetic diversity (h) varied from 0.12 to 0.21. The genetic diversity was 1.5 times greater in inconnu populations of Irtysh River compared to populations of the Ob and Taz rivers. Populations of inconnu of the Severnaya Sosva and Taz rivers were genetically closer to each other than to populations of the Irtysh and Ob rivers. Genetic differentiation of inconnu in the studied part of the distribution area is well-defined; interpopulation diversity accounts for 35% of the genetic diversity (Gst = 0.351), while gene flow is low (Nm = 0.924). Genetic data confirm the distinction of two inconnu population: northern (the Taz River, Severnaya Sosva River) and southern (the Irtysh River). The data on genetic polymorphism and differentiation of inconnu populations from the rivers of Western Siberia can be useful for making scientifically based decisions on the restoration and rational use of stocks of this valuable species of whitefish.
References
Литература
Богданов, В. (2015) Современное состояние и проблемы восстановления ресурсов сиговых рыб нижней Оби. Экология Сибири и Урала, № 1, с. 22–26.
Боровикова, Е. А. (2016) Молекулярно-генетические исследования в решении проблем филогении и филогеографии сиговых рыб (Coregonidae). Труды Института биологии внутренних вод им. И. Д. Папанина РАН, вып. 73 (76), с. 46–63. https://doi.org/10.24411/0320-3557-2016-10004
Боровикова, Е. А., Махров, А. А. (2009) Систематическое положение и происхождение сигов (Coregonus, Coregonidae, Osteichthyes) Европы. Генетический подход. Успехи современной биологии, т. 129, № 1, с. 58–66.
Бухардинова, М. В. (2022a) Обзор данных по биологии нельмы Stenodus leucichthys nelma (Pallas, 1773). Вестник Астраханского государственного технического университета. Серия: Рыбное хозяйство, № 4, с. 90–102. https://doi.org/10.24143/2073-5529-2022-4-90-102
Бухардинова, М. В. (2022b) Распространение и миграционный цикл нельмы Stenodus leucichthys nelma (Pallas, 1773). Вестник Астраханского государственного технического университета, № 1 (73), с. 16–24. https://doi.org/10.24143/1812-9498-2022-1-16-24
Голованова, Т. С. (2005) Анализ генетической изменчивости белорыбицы и нельмы Stenodus leucichthys (Güldenstädt, 1772) в связи с задачами искусственного воспроизводства. Автореферат диссертации на соискание степени кандидата биологических наук. М., ВНИРО, 24 с.
Жигилева, О. Н., Мельничук, А. Д., Могильникова, Е. Н. и др. (2024) Пространственно-временная динамика показателей генетического полиморфизма рыб Обь-Иртышского бассейна. В кн.: Д. В. Тихоненков (ред.). Биоразнообразие и экология популяций и сообществ водных и околоводных организмов бассейна Средней и Нижней Оби. Волгоград: Перископ-Волга, с. 220–282.
Жигилева, О. Н., Селюков, А. Г., Алексеева, Е. А., Похазникова, А. А. (2022) Изменение показателей генетического полиморфизма сиговых рыб при искусственном воспроизводстве. В кн.: Изучение водных и наземных экосистем: история и современность. Тезисы докладов II Международной научно-практической конференции. Севастополь: Институт биологии южных морей имени А. О. Ковалевского РАН, с. 265–266.
Жигилева, О. Н., Селюков, А. Г., Мельничук, А. Д., Матасова, Д. А. (2021) Мониторинг и сохранение генетического полиморфизма сиговых рыб при искусственном воспроизводстве. В кн.: Перспективные технологии аквакультуры: материалы Всероссийской научно-практической конференции с международным участием. М.: Перо, с. 51–57.
Заделёнов, В. А., Дербинева, Е. В. (2020) Нельма Stenodus leucichthys nelma (Pallas, 1773) (Salmoniformes, Coregonidae) реки Енисей: структура популяции, промысел, воспроизводство. Вопросы рыболовства, т. 21, № 2, с. 156–168. https://doi.org/10.36038/0234-2774-2020-21-2-156-168
Исаева, О. М., Заделенов, В. А., Политов, Д. В. (2015) Популяционная изменчивость нельмы р. Енисей. В кн.: С. Л. Рудакова (ред.). Современное состояние и методы изучения экосистем внутренних водоемов: сборник материалов I Всероссийской научной конференции, посвященной 100-летию со дня рождения Игоря Ивановича Куренкова. Петропавловск-Камчатский: КамчатНИРО, с. 157–161.
Кассал, Б. Ю. (2019) Росто-весовая характеристика нельмы Stenodus leucichthys nelma (Pallas, 1773) из реки Иртыш. Байкальский зоологический журнал, № 3 (26), с. 64–69.
Похазникова, А. А., Жигилева, О. Н., Селюков, А. Г., Айтмухамбетова, И. Р. (2024) Оценка генетического разнообразия чира Coregonus nasus при искусственном выращивании молоди. АПК: Инновационные технологии, № 1 (64), с. 60–70.
Чакалтана, Д. А. (2012) Современное состояние запасов белорыбицы в Волго-Каспийском бассейне. Вестник КазНУ. Серия экологическая, т. 33, № 1, с. 136–139.
Шестаков, А. В. (2005) Материалы по биологии нельмы (Stenodus leucichthys nelma) среднего течения реки Анадырь. Чтения памяти Владимира Яковлевича Леванидова, вып. 3, с. 552–556.
Шилин, Н. И. (2022) Современное состояние белорыбицы Stenodus leucichthys leucichthys и проблемы её искусственного воспроизводства. Охрана окружающей среды и заповедное дело, № 2, с. 21–25.
Bender, W., Spierer, P., Hogness, D. S., Chambon, P. (1983) Chromosomal walking and jumping to isolate DNA from the Ace and rosy loci and the bithorax complex in Drosophila melanogaster. Journal of Molecular Biology, vol. 168, no. 1, pp. 17–33. https://doi.org/10.1016/S0022-2836(83)80320-9
Brown, R. J., Drew, K. A., Olsen, J. B. (2025) Yukon River Inconnu: Biology, distribution, and migration. Transactions of the American Fisheries Society, vol. 154, no. 5, pp. 505–522. https://doi.org/10.1093/tafafs/vnaf026
Hellmair, M., Kinziger, A. P. (2014) Increased extinction potential of insular fish populations with reduced life history variation and low genetic diversity. PLoS One, vol. 9, no. 11, article e113139. https://doi.org/10.1371/journal.pone.0113139
Horreo, J. L. (2017) Revisiting the mitogenomic phylogeny of Salmoninae: New insights thanks to recent sequencing advances. PeerJ, vol. 5, article e3828. https://doi.org/10.7717/peerj.3828
Kondakova, E. A., Bogdanova, V. A., Ottesen, O., Alexandrov, A. A. (2023) The development of the digestive system and the fate of the yolk syncytial layer in postembryogenesis of Stenodus leucichthys nelma (Teleostei). Journal of Morphology, vol. 284, no. 7, article e21604. https://doi.org/10.1002/jmor.21604
Miller, S. J., Underwood, T., Spearman, W. J. (1998) Genetic assessment of inconnu (Stenodus leucichthys) from the Selawik and Kobuk Rivers, Alaska, using PCR and RFLP analyses. Anchorage: U.S. Fish and Wildlife Service Publ., 13 p. (Alaska Fisheries Technical Report. No. 48).
Peakall, R., Smouse, P. E. (2006) GENALEX 6: Genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, vol. 6, no. 1, pp. 288–295. https://doi.org/10.1111/j.1471-8286.2005.01155.x
Politov, D. V. (2017) Coregonids of Russia: Evolutionary genetic approach in assessment of the current state of biodiversity. Fundamental and Applied Limnology, vol. 189, no. 3, pp. 181–192. https://doi.org/10.1127/fal/2017/0814
Politov, D. V., Gordon, N. Yu., Afanasiev, K. I. et al. (2000) Identification of palearctic coregonid fish species using mtDNA and allozyme genetic markers. Journal of Fish Biology, vol. 57, suppl. A, pp. 51–71. https://doi.org/10.1111/j.1095-8649.2000.tb02244.x
Pritchard, J. K., Stephens, M., Donnelly, P. (2000) Inference of population structure using multilocus genotype data. Genetics, vol. 155, no. 2, pp. 945–959. https://doi.org/10.1093/genetics/155.2.945
Schlei, O. L., Crête-Lafrenière, A., Whiteley, A. R. et al. (2008) DNA barcoding of eight North American coregonine species. Molecular Ecology Resources, vol. 8, no. 6, pp. 1212–1218. https://doi.org/10.1111/j.1755-0998.2008.02350.x
Selyukov, A., Zhigileva, O., Shuman, L. et al. (2023) Cytomorphological and genetic indicators in the early ontogenesis of the wild and farmed broad whitefish (Coregonus nasus). Aquaculture and Fisheries, vol. 8, no. 3, pp. 261–266. https://doi.org/10.1016/j.aaf.2021.12.012
Wiens, L. N., Bajno, R., Detwiler, J. T. et al. (2021) Genetic assessment of Inconnu (Stenodus leucichthys) in Great Slave Lake, Northwest Territories, Canada. Fisheries Research, vol. 234, article 105784. https://doi.org/10.1016/j.fishres.2020.105784
Yeh, F. C., Yang, R.-C., Boyle, T. (1999) Popgene. Version 1.31. [Online]. Available at: http://www.ualberta.ca/~fyeh/popgene_download.html (accessed 25.07.2025).
Zietkiewicz, E., Rafalski, A., Labuda, D. (1994) Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics, vol. 20, no. 2, pp. 176–183. https://doi.org/10.1006/geno.1994.1151
References
Bender, W., Spierer, P., Hogness, D. S., Chambon, P. (1983) Chromosomal walking and jumping to isolate DNA from the Ace and rosy loci and the bithorax complex in Drosophila melanogaster. Journal of Molecular Biology, vol. 168, no. 1, pp. 17–33. https://doi.org/10.1016/S0022-2836(83)80320-9 (In English)
Bogdanov, V. (2015) The modern state and problems of restoration of Coregonus fish of the lower Ob River. Ekologiya Sibiri i Urala, no. 1, pp. 22–26. (In Russian)
Borovikova, E. A. (2016) Use of molecular genetic markers in phylogeny and phylogeography of coregonid fishes. Transactions of the Papanin Institute for Biology of Inland Waters RAS, no. 73 (76), pp. 46–63. https://doi.org/10.24411/0320-3557-2016-10004 (In Russian)
Borovikova, E. A., Makhrov, A. A. (2009) Taxonomy and origin of whitefish and ciscoes (Coregonus, Coregonidae, Osteichthyes) in Europe. A genetic approach. Advances in Current Biology, vol. 129, no. 1, pp. 58–66. (In Russian)
Brown, R. J., Drew, K. A., Olsen, J. B. (2025) Yukon River Inconnu: Biology, distribution, and migration. Transactions of the American Fisheries Society, vol. 154, no. 5, pp. 505–522. https://doi.org/10.1093/tafafs/vnaf026 (In English)
Bukhardinova, M. V. (2022a) Review of data on biology of nelma Stenodus leucichthys nelma (Pallas, 1773). Vestnik of Astrakhan State Technical University. Series: Fishing Industry, no. 4, pp. 90–102. https://doi.org/10.24143/2073-5529-2022-4-90-102 (In Russian)
Bukhardinova, M. V. (2022b) Distribution and migration cycle of nelma Stenodus leucichthys nelma (Pallas, 1773). Vestnik of Astrakhan State Technical University, no. 1 (73), pp. 16–24. https://doi.org/10.24143/1812-9498-2022-1-16-24 (In Russian)
Chakaltana, D. A. (2012) The current state of white salmon stocks in the Volga-Caspian basin. Eurasian Journal of Ecology, vol. 33, no. 1, pp. 136–139. (In Russian)
Golovanova, T. S. (2005) Analysis of genetic variability of white salmon and inconnu Stenodus leucichthys (Güldenstädt, 1772) in connection with the tasks of artificial reproduction. Extended abstract of PhD dissertation (Biology). Moscow, VNIRO, 24 p. (In Russian)
Hellmair, M., Kinziger, A. P. (2014) Increased extinction potential of insular fish populations with reduced life history variation and low genetic diversity. PLoS One, vol. 9, no. 11, article e113139. https://doi.org/10.1371/journal.pone.0113139 (In English)
Horreo, J. L. (2017) Revisiting the mitogenomic phylogeny of Salmoninae: New insights thanks to recent sequencing advances. PeerJ, vol. 5, article e3828. https://doi.org/10.7717/peerj.3828 (In English)
Isaeva, O. M., Zadelenov, V. A., Politov, D. V. (2015) Population variability of inconnu of the Yenisei River. In: S. L. Rudakova (ed.). Current state and methods for studying ecosystems of inland waters: Proceedings of the I All-Russian scientific conference dedicated to the 100th anniversary of the birth of Igor Ivanovich Kurenkov. Petropavlovsk-Kamchatsky: KamchatNIRO Publ., pp. 157–161. (In Russian)
Kassal, B. Yu. (2019) Inhabitation of nelma Stenodus leucichthys nelma (Pallas, 1773) in the Ob-Irtysh Basin. Baikal Zoological Journal, no. 3 (26), pp. 64–69. (In Russian)
Kondakova, E. A., Bogdanova, V. A., Ottesen, O., Alexandrov, A. A. (2023) The development of the digestive system and the fate of the yolk syncytial layer in postembryogenesis of Stenodus leucichthys nelma (Teleostei). Journal of Morphology, vol. 284, no. 7, article e21604. https://doi.org/10.1002/jmor.21604 (In English)
Miller, S. J., Underwood, T., Spearman, W. J. (1998) Genetic assessment of inconnu (Stenodus leucichthys) from the Selawik and Kobuk Rivers, Alaska, using PCR and RFLP analyses. Anchorage: U.S. Fish and Wildlife Service Publ., 13 p. (Alaska Fisheries Technical Report. No. 48). (In English)
Peakall, R., Smouse, P. E. (2006) GENALEX 6: Genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, vol. 6, no. 1, pp. 288–295. https://doi.org/10.1111/j.1471-8286.2005.01155.x (In English)
Pokhaznikova, A. A., Zhigileva, O. N., Selyukov, A. G., Aitmukhambetova, I. R. (2024) Assessment of genetic diversity of the broad whitefish Coregonus nasus during artificial rearing. AIC: Innovative Technologies, no. 1 (64), pp. 60–70. (In Russian)
Politov, D. V. (2017) Coregonids of Russia: Evolutionary genetic approach in assessment of the current state of biodiversity. Fundamental and Applied Limnology, vol. 189, no. 3, pp. 181–192. https://doi.org/10.1127/fal/2017/0814 (In English)
Politov, D. V., Gordon, N. Yu., Afanasiev, K. I. et al. (2000) Identification of palearctic coregonid fish species using mtDNA and allozyme genetic markers. Journal of Fish Biology, vol. 57, suppl. A, pp. 51–71. https://doi.org/10.1111/j.1095-8649.2000.tb02244.x (In English)
Pritchard, J. K., Stephens, M., Donnelly, P. (2000) Inference of population structure using multilocus genotype data. Genetics, vol. 155, no. 2, pp. 945–959. https://doi.org/10.1093/genetics/155.2.945 (In English)
Schlei, O. L., Crête-Lafrenière, A., Whiteley, A. R. et al. (2008) DNA barcoding of eight North American coregonine species. Molecular Ecology Resources, vol. 8, no. 6, pp. 1212–1218. https://doi.org/10.1111/j.1755-0998.2008.02350.x (In English)
Selyukov, A., Zhigileva, O., Shuman, L. et al. (2023) Cytomorphological and genetic indicators in the early ontogenesis of the wild and farmed broad whitefish (Coregonus nasus). Aquaculture and Fisheries, vol. 8, no. 3, pp. 261–266. https://doi.org/10.1016/j.aaf.2021.12.012 (In English)
Shestakov, A. V. (2005) The materials in biology of inconnu (Stenodus leucichthys nelma) of middle current of the Anadyr River. Vladimir Ya. Levanidov’s Biennial Memorial Meetings, no. 3, pp. 552–556. (In Russian)
Shilin, N. (2022) The current state of the inconnu Stenodus leucichthys leucichthys and its artificial reproduction problems. Environmental Protection and Nature Reserve Management, no. 2, pp. 21–25. (In Russian)
Wiens, L. N., Bajno, R., Detwiler, J. T. et al. (2021) Genetic assessment of Inconnu (Stenodus leucichthys) in Great Slave Lake, Northwest Territories, Canada. Fisheries Research, vol. 234, article 105784. https://doi.org/10.1016/j.fishres.2020.105784 (In English)
Yeh, F. C., Yang, R.-C., Boyle, T. (1999) Popgene. Version 1.31. [Online]. Available at: http://www.ualberta.ca/~fyeh/popgene_download.html (accessed 25.07.2025). (In English)
Zadelenov, V. A., Derbineva, E. V. (2020) Inconnu Stenodus leucichthys nelma (Pallas, 1773) (Salmoniformes, Coregonidae) River Yenisei: Population structure, fishery, reproduction. Problems of Fisheries, vol. 21, no. 2, pp. 156–168. https://doi.org/10.36038/0234-2774-2020-21-2-156-168 (In Russian)
Zhigileva, O. N., Mel’nichuk, A. D., Mogil’nikova, E. N. et al. (2024) Spatio-temporal dynamics of genetic polymorphism indices in fish of the Ob-Irtysh basin. In: D. V. Tikhonenkov (ed.). Biodiversity and ecology of populations and communities of aquatic and semi-aquatic organisms in the Middle and Lower Ob basin. Volgograd: Periscope-Volga Publ., pp. 220–282. (In Russian)
Zhigileva, O. N., Selyukov, A. G., Alekseeva, E. A., Pokhaznikova, A. A. (2022) Changes in genetic polymorphism indices of whitefish during artificial reproduction. In: Study of aquatic and terrestrial ecosystems: History and contemporary state. Book of abstracts of the 2nd International academic conference. Sevastopol: A. O. Kovalevsky Institute of Biology of the Southern Seas Publ., pp. 265–266. (In Russian)
Zhigileva, O. N., Selyukov, A. G., Melnichuk, A. D., Matasova, D. A. (2021) Monitoring and preservation of genetic polymorphism of sig fish under artificial reproduction. In: Prospective technologies of aquaculture: Proceedings of the All-Russian scientific and practical conference with international participation. Moscow: Pero Publ., pp. 51–57. (In Russian)
Zietkiewicz, E., Rafalski, A., Labuda, D. (1994) Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics, vol. 20, no. 2, pp. 176–183. https://doi.org/10.1006/geno.1994.1151 (In English)
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